Mouse-Derived Gut Microbiota Library

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GemPharmatech has established an open mouse gut bacterial collection, mGBC, by isolating and culturing bacteria from fecal and intestinal contents of mice (Mus musculus) obtained from different laboratories and the wild. A total of 150 isolates belonging to 135 different species spanning 33 families, and 6 phyla were included in the mGBC, including 38 newly identified species, based on detailed morphological, genome sequencing analysis and LPSN.


Species (LPSN)

Family

 (GTDB-Tk)

GPT Strain 

(BioSample)

16S rRNA  

(GenBank)

Genome assembly 

(NCBI)

GMM6 Basis
Enterococcus innesiiEnterococcaceaeGPTB0017PP512800GCA041226365
Clostridium innocuumErysipelotrichaceaeGPTB0033PP512816GCA041226065
Parabacteroides distasonisTannerellaceaeGPTB0035PP512818GCA041225985
Bacteroides thetaiotaomicronBacteroidaceaeGPTB0036PP512819GCA041014885
Escherichia coliEnterobacteriaceaeGPTB0038PP512821GCA041014865
Bifidobacterium pseudolongumBifidobacteriaceaeGPTB0066PP512849GCA041225465
GMM10 Extension
Lactobacillus johnsoniiLactobacillaceaeGPTB0006PP512789GCA041226605
Dubosiella newyorkensisErysipelotrichaceaeGPTB0056PP512839GCA041225685
Streptococcus alactolyticusStreptococcaceaeGPTB0057PP512840GCA041225665
"Sminthonthenecus acetigenes"LachnospiraceaeGPTC0079PP512864GCA041225235
Verrucomicrobiota (Verrucomicrobia) 1
Akkermansia muciniphilaAkkermansiaceaeGPTB0005PP512788GCA041226625
Pseudomonadota (Proteobacteria) 12
Parasutterella excrementihominisBurkholderiaceaeGPTB0081PP512866GCA041225135
Parasutterella excrementihominisBurkholderiaceaeGPTB0089PP512874GCA041224065
Turicimonas murisBurkholderiaceaeGPTB0072PP512856GCA041225355
Citrobacter amalonaticusEnterobacteriaceaeGPTB0021PP512804GCA041226305
Enterobacter kobeiEnterobacteriaceaeGPTB0108PP512894GCA041223725
Enterobacter roggenkampiiEnterobacteriaceaeGPTB0029PP512812GCA041226165
Enterobacter roggenkampiiEnterobacteriaceaeGPTB0031PP512814GCA041226085
Escherichia coliEnterobacteriaceaeGPTB0038PP512821GCA041014865
Klebsiella pasteuriiEnterobacteriaceaeGPTB0032PP512815GCA041226105
Proteus faecisEnterobacteriaceaeGPTB0062PP512845GCA041225645
Proteus faecisEnterobacteriaceaeGPTB0063PP512846GCA041225545
Proteus mirabilisEnterobacteriaceaeGPTB0088PP512873GCA041225055
Actinomycetota (Actinobacteria) 14
"Granulimonas acetigenes"AtopobiaceaeGPTB0071PP512855GCA041225335
Granulimonas faecalisAtopobiaceaeGPTB0050PP512833GCA041226685
Leptogranulimonas caecicolaAtopobiaceaeGPTB0135PP512922GCA041223145
Bifidobacterium pseudolongumBifidobacteriaceaeGPTB0058PP512841GCA041225625
Bifidobacterium pseudolongumBifidobacteriaceaeGPTB0066PP512849GCA041225465
Brachybacterium paraconglomeratumBrevibacteriaceaeGPTB0041PP512824GCA041225925
Brevibacterium linensBrevibacteriaceaeGPTB0040PP512823GCA041226005
Adlercreutzia murisEggerthellaceaeGPTB0087PP512872GCA041224025
Adlercreutzia murisEggerthellaceaeGPTB0116PP512903GCA041223505
Adlercreutzia murisEggerthellaceaeGPTB0119PP512906GCA041223465
"Adlercreutzia propionica"EggerthellaceaeGPTB0070PP512854GCA041225375
Stereobacter intestinalisEggerthellaceaeGPTB0065PP512848GCA041225445
"Corynebacterium aceti"MycobacteriaceaeGPTB0039PP512822GCA041226025
"Corynebacterium ammoniilyticum"MycobacteriaceaeGPTB0052PP512835GCA041225765
Bacteroidota (Bacteroidetes) 20
Bacteroides acidifaciensBacteroidaceaeGPTB0083PP512868GCA041225095
Bacteroides caccaeBacteroidaceaeGPTB0010PP512793GCA041226585
Bacteroides caecimurisBacteroidaceaeGPTB0082PP512867GCA041225115
Bacteroides faecichinchillaeBacteroidaceaeGPTB0004PP512787GCA041226665
Bacteroides nordiiBacteroidaceaeGPTB0053PP512836GCA041225745
Bacteroides stercorirosorisBacteroidaceaeGPTB0008PP512791GCA041226505
Bacteroides thetaiotaomicronBacteroidaceaeGPTB0036PP512819GCA041014885
Bacteroides uniformisBacteroidaceaeGPTB0044PP512827GCA041225905
Bacteroides xylanisolvensBacteroidaceaeGPTB0009PP512792GCA041226565
Bacteroides xylanisolvensBacteroidaceaeGPTB0055PP512838GCA041225725
Phocaeicola doreiBacteroidaceaeGPTB0073PP512857GCA041225315
Phocaeicola sartoriiBacteroidaceaeGPTB0043PP512826GCA041225885
Phocaeicola vulgatusBacteroidaceaeGPTB0049PP512832GCA041225825
Butyricimonas hominisMarinifilaceaeGPTB0028PP512811GCA041226145
Heminiphilus faecisMuribaculaceaeGPTB0137PP512924GCA041223125
Muribaculum intestinaleMuribaculaceaeGPTB0014PP512797GCA041226425
Parabacteroides distasonisTannerellaceaeGPTB0035PP512818GCA041225985
Parabacteroides johnsoniiTannerellaceaeGPTB0075PP512859GCA041225275
"Parabacteroides propionicum"TannerellaceaeGPTB0086PP512871GCA041225035
Parabacteroides segnisTannerellaceaeGPTB0019PP512802GCA041226385
Bacillota (Firmicutes) 51
"Aerococcus propionica"AerococcaceaeGPTB0136PP512923GCA041223225
Bacillus cereusBacillaceaeGPTB0110PP512896GCA041223645
Bacillus licheniformisBacillaceaeGPTB0098PP512884GCA041224965
Niallia circulansBacillaceaeGPTB0132PP512919GCA041223205
"Atopostipes acetigenes"CarnobacteriaceaeGPTB0127PP512914GCA041223305
Thomasclavelia cocleataCoprobacillaceaeGPTB0003PP512786GCA041226645
Thomasclavelia ramosaCoprobacillaceaeGPTB0124PP512911GCA041223425
Enterococcus aviumEnterococcaceaeGPTB0085PP512870GCA041225075
Enterococcus faecalisEnterococcaceaeGPTB0007PP512790GCA041226525
Enterococcus faeciumEnterococcaceaeGPTB0105PP512891GCA041223765
Enterococcus gallinarumEnterococcaceaeGPTB0011PP512794GCA041226545
Enterococcus hiraeEnterococcaceaeGPTB0002PP512785GCA041226705
Enterococcus innesiiEnterococcaceaeGPTB0017PP512800GCA041226365
Enterococcus rattiEnterococcaceaeGPTB0078PP512862GCA041225215
"Allobaculum acetigignens"ErysipelotrichaceaeGPTB0111PP512897GCA041223605
Clostridium innocuumErysipelotrichaceaeGPTB0033PP512816GCA041226065
"Dubosiella acetigenes"ErysipelotrichaceaeGPTB0145PP512932GCA041223005
Dubosiella newyorkensisErysipelotrichaceaeGPTB0056PP512839GCA041225685
Faecalibaculum rodentiumErysipelotrichaceaeGPTB0074PP512858GCA041225295
Ileibacterium valensErysipelotrichaceaeGPTB0114PP512901GCA041223615
Lactobacillus intestinalisLactobacillaceaeGPTB0047PP512830GCA041225805
Lactobacillus johnsoniiLactobacillaceaeGPTB0006PP512789GCA041226605
Lactobacillus taiwanensisLactobacillaceaeGPTB0048PP512831GCA041225845
Ligilactobacillus animalisLactobacillaceaeGPTB0024PP512807GCA041226265
Ligilactobacillus faecisLactobacillaceaeGPTB0016PP512799GCA041226405
Ligilactobacillus murinusLactobacillaceaeGPTB0001PP512784GCA041226725
Limosilactobacillus caviaeLactobacillaceaeGPTB0097PP512883GCA041223825
"Limosilactobacillus propionica"LactobacillaceaeGPTB0068PP512851GCA041225415
Limosilactobacillus reuteriLactobacillaceaeGPTB0018PP512801GCA041226345
Jeotgalicoccus halotoleransSalinicoccaceaeGPTB0046PP512829GCA041225865
Mammaliicoccus lentusStaphylococcaceaeGPTB0022PP512805GCA041226285
Mammaliicoccus sciuriStaphylococcaceaeGPTB0015PP512798GCA041226485
Staphylococcus arlettaeStaphylococcaceaeGPTB0027PP512810GCA041226185
Staphylococcus capitisStaphylococcaceaeGPTB0084PP512869GCA041224105
Staphylococcus epidermidisStaphylococcaceaeGPTB0076PP512860GCA041225255
Staphylococcus equorumStaphylococcaceaeGPTB0034PP512817GCA041226045
Staphylococcus hominisStaphylococcaceaeGPTB0042PP512825GCA041225945
Staphylococcus nepalensisStaphylococcaceaeGPTB0025PP512808GCA041226225
Staphylococcus nepalensisStaphylococcaceaeGPTB0026PP512809GCA041226205
Staphylococcus shiniiStaphylococcaceaeGPTB0023PP512806GCA041226245
Staphylococcus xylosusStaphylococcaceaeGPTB0013PP512796GCA041226445
Lactococcus ileimucosaeStreptococcaceaeGPTB0069PP512852GCA041225485
Lactococcus ileimucosaeStreptococcaceaeGPTC0069PP512853GCA041225395
Lactococcus murisStreptococcaceaeGPTB0061PP512844GCA041225605
Lactococcus taiwanensisStreptococcaceaeGPTB0059PP512842GCA041225585
Lactococcus taiwanensisStreptococcaceaeGPTB0060PP512843GCA041225565
Streptococcus alactolyticusStreptococcaceaeGPTB0045PP512828Processing
Streptococcus alactolyticusStreptococcaceaeGPTB0057PP512840GCA041225665
Streptococcus ferusStreptococcaceaeGPTB0020PP512803GCA041226325
Streptococcus hyointestinalisStreptococcaceaeGPTB0067PP512850GCA041225505
Streptococcus merionisStreptococcaceaeGPTB0080PP512865GCA041225175
Bacillota_A (Firmicutes) 52
"Acutalibacter acetigignens"AcutalibacteraceaeGPTB0101PP512887GCA041223885
"Acutalibacter propionica"AcutalibacteraceaeGPTB0064PP512847GCA041225525
"Sminthofimenecus propionicum"AnaerotignaceaeGPTB0115PP512902GCA041223565
Emergencia timonensisAnaerovoracaceaeGPTB0123PP512910GCA041223385
"Muriventradaptatus butyricum"AnaerovoracaceaeGPTB0096PP512882GCA041223905
Senimuribacter intestinalisAnaerovoracaceaeGPTB0095PP512881GCA041223985
"Sminthegerieenecus propionica"ChristensenellaceaeGPTB0106PP512892GCA041223705
Clostridium perfringensClostridiaceaeGPTB0143PP512930GCA041222965
Clostridium sporogenesClostridiaceaeGPTB0037PP512820GCA041225965
Clostridium sporogenesClostridiaceaeGPTB0054PP512837GCA041225705
Anaerostipes hominisLachnospiraceaeGPTB0030PP512813GCA041226125
Blautia coccoidesLachnospiraceaeGPTB0130PP512917GCA041223265
Blautia coccoidesLachnospiraceaeGPTB0142PP512929GCA041222945
Blautia marasmiLachnospiraceaeGPTB0120PP512907GCA041223525
Blautia pseudococcoidesLachnospiraceaeGPTB0051PP512834GCA041225785
Corynebacterium doosanenseLachnospiraceaeGPTB0131PP512918GCA041223245
Enterocloster aldenensisLachnospiraceaeGPTB0144PP512931GCA041222985
"Lacrimispora cellulosolvens"LachnospiraceaeGPTB0138PP512925GCA041223105
"Murenterenecus propionica"LachnospiraceaeGPTB0139PP512926GCA041223065
"Muricholadocola cellulolyticus"LachnospiraceaeGPTB0077PP512861GCA041225195
"Murinteraneicola acetigenes"LachnospiraceaeGPTB0112PP512898GCA041223665
"Murinteraneicola acetigenes"LachnospiraceaeGPTC0112PP512899Processing
"Muriscatenecus acetigignens"LachnospiraceaeGPTB0121PP512908GCA041223365
"Muriscatenecus nanjingensis"LachnospiraceaeGPTB0100PP512886GCA041224935
Murispiricella intestinalisLachnospiraceaeGPTB0090PP512875GCA041224995
"Muristercorimonas acetigenes"LachnospiraceaeGPTB0099PP512885GCA041223845
"Muristercorimonas beijingensis"LachnospiraceaeGPTB0117PP512904GCA041223545
"Muristercorimonas propionicum"LachnospiraceaeGPTB0118PP512905GCA041223485
"Muronthocola acetigenes"LachnospiraceaeGPTB0102PP512888GCA041223865
"Muronthocola butyricum"LachnospiraceaeGPTB0079PP512863GCA041225155
"Muronthocola propionica"LachnospiraceaeGPTB0104PP512890GCA041223785
"Muronthocola shanghaiensis"LachnospiraceaeGPTB0146PP512933GCA041223025
Roseburia muris LachnospiraceaeGPTB0091PP512876GCA041223945
"Sminthocaecivivens cellulolyticus"LachnospiraceaeGPTB0140PP512927GCA041223045
"Sminthonthenecus acetigenes"LachnospiraceaeGPTC0079PP512864GCA041225235
"Sminthonthenecus fibrisolvens"LachnospiraceaeGPTB0109PP512895GCA041223685
"Sminthonthenecus propionica"LachnospiraceaeGPTB0125PP512912GCA041223405
Flavonifractor plautiiOscillospiraceaeGPTB0129PP512916GCA041223285
"Muregerieimonas aceti"OscillospiraceaeGPTB0103PP512889GCA041223805
"Muregerieimonas butyrica"OscillospiraceaeGPTB0133PP512920GCA041223185
"Muregerieimonas nanjingensis"OscillospiraceaeGPTB0107PP512893GCA041223735
"Muregerieimonas propionicum"OscillospiraceaeGPTB0122PP512909GCA041223445
"Smintholimicola acetigignens"OscillospiraceaeGPTB0094PP512880GCA041223955
"Smintholimicola propionica"OscillospiraceaeGPTB0134PP512921GCA041223165
Clostridioides difficilePeptostreptococcaceaeGPTB0141PP512928GCA041223085
Paraclostridium bifermentansPeptostreptococcaceaeGPTB0012PP512795GCA041226465
Anaerotruncus colihominisRuminococcaceaeGPTB0092PP512877GCA041223925
Anaerotruncus colihominisRuminococcaceaeGPTC0092PP512878GCA041225015
Bittarella massiliensisRuminococcaceaeGPTB0128PP512915GCA041223335
Merdimmobilis hominisRuminococcaceaeGPTB0113PP512900GCA041223585
Anaerosalibacter bizertensisSporanaerobacteraceaeGPTB0126PP512913GCA041223325
Tissierella praeacutaTissierellaceaeGPTB0093PP512879GCA041224005


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